Sausage Peppers Spaghetti Squash

Golden-brown Sausage and Peppers Spaghetti Squash Casserole bubbling in a baking dish with fresh basil garnish. Save to Pinterest
Golden-brown Sausage and Peppers Spaghetti Squash Casserole bubbling in a baking dish with fresh basil garnish. | yummyhauskitchen.com

This comforting low-carb casserole blends tender roasted spaghetti squash with browned Italian sausage and sautéed bell peppers. Tossed in a rich marinara sauce and topped with melted mozzarella and Parmesan, it’s baked until bubbly and golden. Aromatic herbs enhance the flavors while the combination offers a hearty, gluten-free meal option perfect for easy weeknight dinners or prepping ahead. Fresh basil garnish adds a burst of freshness to each satisfying serving.

My neighbor Theresa brought this over when I was recovering from surgery last winter. I took one bite and actually asked her for the recipe right then at my front door. Now it is the single most requested dish at every family gathering.

Last Sunday my brother-in-law took three helpings and finally admitted he hates regular spaghetti squash. The way the sweet peppers and salty sausage melt together completely transforms the squash into something rich and comforting.

Ingredients

  • 1 large spaghetti squash: Look for one that feels heavy for its size with a hard rind and no soft spots
  • 12 oz Italian sausage: Mild lets the other flavors shine but hot adds a wonderful kick that cuts through the cheese
  • 1 red and 1 yellow bell pepper: The mix of colors makes it beautiful while the different pepper varieties add sweetness and depth
  • 1 small yellow onion: Thinly sliced so it melts into the sauce rather than staying crunchy
  • 2 cloves garlic: Fresh minced is essential here because garlic powder cannot replicate that aromatic punch
  • 1 1/2 cups marinara sauce: Use your favorite brand but check labels for hidden sugar if watching carbs
  • 1 cup shredded mozzarella and 1/4 cup grated Parmesan: The mozzarella creates those irresistible cheese pulls while Parmesan adds that salty umami finish
  • 2 tbsp olive oil: One for roasting the squash and one for cooking the sausage mixture
  • 1/2 tsp dried oregano and basil each: These Mediterranean herbs bridge the gap between the squash and Italian sausage flavors
  • 1/4 tsp crushed red pepper flakes: Optional but highly recommended even if using mild sausage

Instructions

Roast the squash:
Preheat your oven to 400°F then cut that stubborn squash in half lengthwise and scoop out the seeds like you are carving a pumpkin. Brush the cut sides with olive oil and season generously before placing them cut-side down on a parchment-lined baking sheet. Let them roast for 35 to 40 minutes until a fork easily slides through the flesh.
Cook the sausage:
While the squash works its magic in the oven heat the remaining olive oil in a large skillet over medium heat. Add the sausage breaking it up with your wooden spoon until it is browned and cooked through about 6 or 7 minutes.
Add the vegetables:
Toss in your sliced onions and bell peppers sautéing for about 5 minutes until they soften and start to smell amazing. Stir in the garlic oregano basil and red pepper flakes cooking for just one more minute so the garlic does not burn.
Build the sauce:
Pour in the marinara sauce and let everything simmer together for 5 minutes. This step lets the flavors become best friends before they even meet the squash.
Prepare the squash:
Once the squash is cool enough to handle use a fork to scrape the flesh into those signature spaghetti strands. Discard the skins and reduce your oven temperature to 375°F.
Assemble everything:
In a large mixing bowl combine the squash strands sausage mixture half the mozzarella and half the Parmesan. Mix it well then transfer to a greased 9x13-inch baking dish. Top with the remaining cheese because that golden bubbly top is non-negotiable.
Bake to perfection:
Bake uncovered for 15 to 20 minutes until the cheese is melted and bubbling and starting to turn golden in spots. Let it rest for 5 minutes before serving which feels like torture but helps portions hold together better.
Hearty Sausage and Peppers Spaghetti Squash Casserole served on a white plate next to a green salad. Save to Pinterest
Hearty Sausage and Peppers Spaghetti Squash Casserole served on a white plate next to a green salad. | yummyhauskitchen.com

This recipe became my go-to for new parents because it freezes beautifully and reheats without losing texture. My friend Sarah texted me at 11pm after her baby was born asking for the recipe because her husband had just devoured the last serving.

Make It Your Own

Swap the sausage for ground turkey and add extra fennel seeds to mimic that Italian sausage flavor. Sometimes I throw in spinach or kale during the last few minutes of sausage cooking for extra nutrition.

Serving Suggestions

A simple green salad with balsamic vinaigrette cuts through the richness perfectly. Garlic bread would be traditional but roasted broccoli on the side keeps it lighter while still feeling complete.

Storage and Reheating

The casserole keeps in the refrigerator for up to 4 days and actually develops deeper flavor overnight. For freezing wrap individual portions tightly and they will last 3 months.

  • Reheat covered at 350°F for 15-20 minutes or until heated through
  • Microwave individual portions with a damp paper paper towel to prevent drying
  • Add a sprinkle of fresh cheese when reheating to revive the melted texture
Close-up of Sausage and Peppers Spaghetti Squash Casserole showing melted mozzarella and roasted peppers on top. Save to Pinterest
Close-up of Sausage and Peppers Spaghetti Squash Casserole showing melted mozzarella and roasted peppers on top. | yummyhauskitchen.com

There is something so satisfying about serving comfort food that happens to be good for you. Watch everyone go back for seconds.

Frequently asked questions about this recipe

Cut the squash in half lengthwise, remove seeds, brush with olive oil, season, and roast cut-side down at 400°F for 35–40 minutes until tender.

Yes, plant-based sausage or sautéed mushrooms can replace the sausage for a vegetarian-friendly dish.

Dried oregano, basil, and fresh basil garnish provide aromatic notes that enhance the savory and sweet ingredients.

Using gluten-free marinara and sausage ensures the dish remains gluten-free without sacrificing flavor.

Sprinkle shredded mozzarella and grated Parmesan evenly on top before baking at 375°F for 15–20 minutes until golden and bubbly.

Sausage Peppers Spaghetti Squash

Roasted spaghetti squash with Italian sausage and bell peppers in a flavorful tomato sauce, baked to perfection.

Prep 25m
Cook 50m
Total 75m
Servings 4
Difficulty Easy

Ingredients

Vegetables

  • 1 large spaghetti squash (about 3 lbs)
  • 1 red bell pepper, sliced
  • 1 yellow bell pepper, sliced
  • 1 small yellow onion, thinly sliced
  • 2 cloves garlic, minced

Meats

  • 12 oz Italian sausage (mild or hot), casings removed

Sauces & Dairy

  • 1 1/2 cups marinara sauce (gluten-free if needed)
  • 1 cup shredded mozzarella cheese
  • 1/4 cup grated Parmesan cheese

Pantry & Seasonings

  • 2 tbsp olive oil
  • 1/2 tsp dried oregano
  • 1/2 tsp dried basil
  • 1/4 tsp crushed red pepper flakes (optional)
  • Salt and freshly ground black pepper, to taste
  • Fresh basil, for garnish (optional)

Instructions

1
Preheat Oven and Prepare Baking Sheet: Preheat the oven to 400°F. Line a baking sheet with parchment paper.
2
Prepare Spaghetti Squash: Cut the spaghetti squash in half lengthwise. Scoop out the seeds. Brush the cut sides with 1 tablespoon olive oil and season with salt and pepper.
3
Roast the Squash: Place squash halves cut-side down on the baking sheet. Roast for 35–40 minutes, until tender and strands easily pull away with a fork.
4
Brown the Sausage: While the squash roasts, heat the remaining olive oil in a large skillet over medium heat. Add sausage; cook, breaking it up with a spoon, until browned and cooked through, about 6–7 minutes.
5
Sauté Vegetables: Add onions and bell peppers. Sauté for 5 minutes until softened. Stir in garlic, oregano, basil, and red pepper flakes (if using); cook 1 minute more.
6
Add Marinara Sauce: Pour in the marinara sauce. Simmer for 5 minutes, then remove from heat.
7
Scrape Squash into Strands: Once the squash is cool enough to handle, use a fork to scrape the flesh into spaghetti-like strands. Discard the skins.
8
Reduce Oven Temperature: Reduce oven temperature to 375°F.
9
Combine Filling: In a large mixing bowl, combine squash strands, sausage mixture, half the mozzarella, and half the Parmesan. Mix well and season to taste.
10
Assemble Casserole: Transfer mixture to a greased 9x13-inch baking dish. Top with remaining mozzarella and Parmesan.
11
Bake Until Golden: Bake uncovered for 15–20 minutes, until bubbly and golden.
12
Rest and Serve: Let rest 5 minutes before garnishing with fresh basil and serving.
Additional Information

Equipment Needed

  • Sharp chef's knife
  • Baking sheet
  • Large skillet
  • Mixing bowl
  • 9x13-inch baking dish
  • Wooden spoon or spatula

Nutrition (Per Serving)

Calories 390
Protein 25g
Carbs 22g
Fat 23g

Allergy Information

  • Contains dairy (mozzarella, Parmesan)
  • Contains pork (unless using chicken/turkey/vegetarian sausage)
  • Gluten-free if using gluten-free marinara and sausage
  • Always check ingredient labels for hidden allergens
Lea Hoffmann

Passionate home cook sharing easy recipes, cooking tips, and wholesome meal inspiration.